MLOC_70143 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6797921.251650.7897540.945455
LEAShoots from the seedlings (10 cm shoot stage)6.826689.409778.525616.62121
INF1Young developing inflorescences (5mm)1.949162.239481.729341.61908
INF2Developing inflorescences (1-1.5 cm)1.794121.981711.89131.9605
ROORoots from the seedlings (10 cm shoot stage)0.1743660.4551870.5678910.481376
NODDeveloping tillers at six leaf stage, 3rd internode4.449535.090476.6266517.0909
CAR5Developing grain, bracts removed (5 DPA)3.56952.976023.090562.93405
CAR15Developing grain, bracts removed (15 DPA)0.6009930.5491430.5725251.2953



CDS Structure of MLOC_70143






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70143.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359993NoneNoneNoneNone
MLOC_70143.4CUST_5855_PI427708080AvailableAvailablecontig_5750 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g57410.3 +1 0.0 1018 509/606 (84%) 13101.m15083 protein pentatricopeptide repeat domain containing protein, putative, expressed
TAIR PP10 AT1G09900.1 +1 4e-128 400 194/522 (37%) Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3218133-3219929 FORWARD LENGTH=598