MLOC_70120 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.732373.92358.995879.3719
LEAShoots from the seedlings (10 cm shoot stage)89.586876.627745.993277.2536
INF1Young developing inflorescences (5mm)165.921129.47106.619135.422
INF2Developing inflorescences (1-1.5 cm)169.21166.901129.987222.003
ROORoots from the seedlings (10 cm shoot stage)7.7603817.063712.012729.8534
NODDeveloping tillers at six leaf stage, 3rd internode18.099517.954314.541988.8298
CAR5Developing grain, bracts removed (5 DPA)57.388353.848255.26972.2115
CAR15Developing grain, bracts removed (15 DPA)22.49221.771918.720660.3646



CDS Structure of MLOC_70120






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70120.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374943NoneNoneNoneNone
MLOC_70120.1CUST_5851_PI427708080AvailableAvailablecontig_57478 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48010.1 +1 4e-173 521 326/423 (77%) 13102.m05420 protein nuclear matrix constituent protein 1-like, putative, expressed
TAIR PP10 AT1G67230.1 +1 1e-88 295 171/390 (44%) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132