MLOC_70077 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.345050.5548820.6326060.82752
LEAShoots from the seedlings (10 cm shoot stage)4.876197.941526.317865.84993
INF1Young developing inflorescences (5mm)0.1066150.02396190.08194790.0636498
INF2Developing inflorescences (1-1.5 cm)0.4892710.4806170.9935350.769281
ROORoots from the seedlings (10 cm shoot stage)2.840844.494710.9574975.28146
NODDeveloping tillers at six leaf stage, 3rd internode0.3029880.2399380.2303740.804692
CAR5Developing grain, bracts removed (5 DPA)1.087520.8202820.8063441.01176
CAR15Developing grain, bracts removed (15 DPA)19.686318.821316.264449.503



CDS Structure of MLOC_70077






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70077.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364111CUST_24731_PI427708080NoneNoneNone
MLOC_70077.2CUST_18391_PI427708080AvailableAvailablecontig_138482 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g09850.1 +3 1e-177 511 277/361 (77%) 13110.m00868 protein EF hand family protein, putative, expressed
TAIR PP10 AT4G38810.2 +3 4e-129 386 207/361 (57%) Calcium-binding EF-hand family protein | chr4:18115607-18118860 REVERSE LENGTH=375