MLOC_70006 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.586316.274517.021717.1729
LEAShoots from the seedlings (10 cm shoot stage)18.149335.820141.948622.3163
INF1Young developing inflorescences (5mm)14.392216.252917.945813.5824
INF2Developing inflorescences (1-1.5 cm)16.338215.441917.465117.2286
ROORoots from the seedlings (10 cm shoot stage)42.040332.860727.826132.4888
NODDeveloping tillers at six leaf stage, 3rd internode25.912320.182230.728950.7659
CAR5Developing grain, bracts removed (5 DPA)24.280727.933924.67123.9008
CAR15Developing grain, bracts removed (15 DPA)5.679975.17986.5891813.6699



CDS Structure of MLOC_70006






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70006.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70006.1CUST_15484_PI427708080AvailableAvailablecontig_57299 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g08564.1 +3 2e-41 140 63/74 (85%) 13106.m00899 protein OsRCI2-8 - Putative low temperature and salt responsive protein, expressed
TAIR PP10 AT2G24040.1 +3 1e-21 87 37/56 (66%) Low temperature and salt responsive protein family | chr2:10224028-10224531 FORWARD LENGTH=75