MLOC_69811 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.029415.713215.821817.9106
LEAShoots from the seedlings (10 cm shoot stage)12.24169.6883317.485510.6878
INF1Young developing inflorescences (5mm)25.170727.401823.761519.9091
INF2Developing inflorescences (1-1.5 cm)15.058214.335916.798815.4007
ROORoots from the seedlings (10 cm shoot stage)22.194618.012718.475619.5334
NODDeveloping tillers at six leaf stage, 3rd internode2.765334.8436110.883317.1663
CAR5Developing grain, bracts removed (5 DPA)14.525613.067814.41111.993
CAR15Developing grain, bracts removed (15 DPA)4.696475.642923.358899.74187



CDS Structure of MLOC_69811






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69811.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_69811.2NoneAvailableAvailablecontig_56991 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g43830.1 +2 6e-38 135 86/108 (80%) 13112.m04622 protein NUC189 domain containing protein, expressed
TAIR PP10 AT1G15420.1 +2 2e-13 68 48/104 (46%) CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). | chr1:5301794-5303296 REVERSE LENGTH=278