- Predicted Gene MLOC_69811
MLOC_69811 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_69811_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 28.0294 | 15.7132 | 15.8218 | 17.9106 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 12.2416 | 9.68833 | 17.4855 | 10.6878 |
INF1 | Young developing inflorescences (5mm) | 25.1707 | 27.4018 | 23.7615 | 19.9091 |
INF2 | Developing inflorescences (1-1.5 cm) | 15.0582 | 14.3359 | 16.7988 | 15.4007 |
ROO | Roots from the seedlings (10 cm shoot stage) | 22.1946 | 18.0127 | 18.4756 | 19.5334 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.76533 | 4.84361 | 10.8833 | 17.1663 |
CAR5 | Developing grain, bracts removed (5 DPA) | 14.5256 | 13.0678 | 14.411 | 11.993 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.69647 | 5.64292 | 3.35889 | 9.74187 |
CDS Structure of MLOC_69811
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_69811.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g43830.1 |
+2 |
6e-38 |
135 |
86/108 (80%) |
13112.m04622 protein NUC189 domain containing protein, expressed |
TAIR PP10 |
AT1G15420.1 |
+2 |
2e-13 |
68 |
48/104 (46%) |
CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). | chr1:5301794-5303296 REVERSE LENGTH=278 |