MLOC_69804 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.207740.843136.024338.7094
LEAShoots from the seedlings (10 cm shoot stage)29.094819.958134.910323.4651
INF1Young developing inflorescences (5mm)69.996372.368170.225460.8465
INF2Developing inflorescences (1-1.5 cm)45.226258.519748.560657.1448
ROORoots from the seedlings (10 cm shoot stage)18.199830.510528.537133.5917
NODDeveloping tillers at six leaf stage, 3rd internode5.542627.599213.089927.0722
CAR5Developing grain, bracts removed (5 DPA)47.793652.538650.382649.3418
CAR15Developing grain, bracts removed (15 DPA)71.952972.32962.3492167.984



CDS Structure of MLOC_69804






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69804.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362329NoneNoneNoneNone
MLOC_69804.2CUST_5809_PI427708080AvailableAvailablecontig_56977 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g04440.1 +1 0.0 1070 556/623 (89%) 13112.m00424 protein 2-isopropylmalate synthase B, putative, expressed
TAIR PP10 AT1G74040.1 +1 0.0 783 394/556 (71%) | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631