MLOC_69558 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.897847.274686.890917.55737
LEAShoots from the seedlings (10 cm shoot stage)23.475620.44223.943119.3974
INF1Young developing inflorescences (5mm)4.733085.315835.127764.88349
INF2Developing inflorescences (1-1.5 cm)2.651083.386433.447063.93115
ROORoots from the seedlings (10 cm shoot stage)0.1513381.312441.723211.56595
NODDeveloping tillers at six leaf stage, 3rd internode19.831824.25241.305985.0038
CAR5Developing grain, bracts removed (5 DPA)10.064212.90429.9474312.4184
CAR15Developing grain, bracts removed (15 DPA)0.6340090.709590.6587641.83252



CDS Structure of MLOC_69558






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69558.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362338NoneNoneNoneNone
MLOC_69558.1CUST_5775_PI427708080AvailableAvailablecontig_56612 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g45030.1 -3 1e-144 417 223/275 (81%) 13105.m04777 protein calcium homeostasis regulator CHoR1, putative, expressed
TAIR PP10 AT3G55250.1 -3 2e-79 249 138/259 (53%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20479302-20480324 FORWARD LENGTH=277