MLOC_69556 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.50179.256229.232058.85998
LEAShoots from the seedlings (10 cm shoot stage)10.85568.409726.109996.76284
INF1Young developing inflorescences (5mm)1.863851.763032.646021.43297
INF2Developing inflorescences (1-1.5 cm)3.277082.518912.374712.6559
ROORoots from the seedlings (10 cm shoot stage)5.009866.9473710.59417.51093
NODDeveloping tillers at six leaf stage, 3rd internode10.80828.611665.4172523.6715
CAR5Developing grain, bracts removed (5 DPA)2.600422.517572.974412.22127
CAR15Developing grain, bracts removed (15 DPA)0.6419230.4244980.57831.06421



CDS Structure of MLOC_69556






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69556.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355602NoneNoneNoneNone
MLOC_69556.2CUST_5774_PI427708080AvailableAvailablecontig_5661 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g32360.1 -1 4e-48 172 112/158 (71%) 13112.m03300 protein expressed protein
TAIR PP10 AT5G43140.1 +2 5e-28 116 50/97 (52%) Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:17321570-17323224 FORWARD LENGTH=254