MLOC_69506 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)3.642162.115833.154511.79198
INF2Developing inflorescences (1-1.5 cm)37.847341.45946.034332.0973
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.0079922700.0532506
CAR5Developing grain, bracts removed (5 DPA)15.085415.744219.168410.6884
CAR15Developing grain, bracts removed (15 DPA)2.232691.8381.566133.21029



CDS Structure of MLOC_69506






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69506.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_69506.1NoneAvailableAvailablecontig_56526 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11614.1 -1 2e-25 108 55/57 (96%) 13103.m01314 protein OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT1G24260.3 -1 2e-22 99 48/57 (84%) | Symbols: SEP3 | K-box region and MADS-box transcription factor family protein | chr1:8593790-8595862 REVERSE LENGTH=237