MLOC_69480 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.175211.92091.376171.80189
LEAShoots from the seedlings (10 cm shoot stage)1.100771.318211.419671.01244
INF1Young developing inflorescences (5mm)2.8892.815922.179532.20908
INF2Developing inflorescences (1-1.5 cm)3.230522.530823.030073.08993
ROORoots from the seedlings (10 cm shoot stage)0.6856141.583321.671011.57771
NODDeveloping tillers at six leaf stage, 3rd internode0.7005381.114720.7597933.12454
CAR5Developing grain, bracts removed (5 DPA)2.738572.85742.707562.61608
CAR15Developing grain, bracts removed (15 DPA)1.502371.541441.117653.23568



CDS Structure of MLOC_69480






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69480.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355034NoneNoneNoneNone
MLOC_69480.1CUST_18381_PI427708080AvailableAvailablecontig_56480 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g34160.1 -2 7e-134 402 224/363 (62%) 13105.m03547 protein mTERF domain containing protein, expressed
TAIR PP10 AT5G07900.1 -2 3e-33 132 92/308 (30%) Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405