MLOC_6948 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.855523.98327.840819.8128
LEAShoots from the seedlings (10 cm shoot stage)30.513342.417950.751927.2301
INF1Young developing inflorescences (5mm)6.44388.4557510.79154.91544
INF2Developing inflorescences (1-1.5 cm)7.806196.404168.379436.29318
ROORoots from the seedlings (10 cm shoot stage)39.110633.119333.706432.4091
NODDeveloping tillers at six leaf stage, 3rd internode37.07434.532439.151299.6797
CAR5Developing grain, bracts removed (5 DPA)6.529136.756028.635635.31842
CAR15Developing grain, bracts removed (15 DPA)2.999633.289142.804094.98947



CDS Structure of MLOC_6948






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6948.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6948.3CUST_15411_PI427708080AvailableAvailablecontig_138379 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g26954.2 +3 2e-93 290 142/200 (71%) 13105.m10315 protein saposin-like type B, region 1 family protein, putative, expressed
TAIR PP10 AT3G51730.1 +3 2e-43 155 70/191 (37%) saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213