MLOC_6947 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 11.7487 | 10.6623 | 9.70925 | 13.0336 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 2.43698 | 0.261672 | 0.395966 | 0.904093 |
| INF1 | Young developing inflorescences (5mm) | 19.0747 | 21.4045 | 19.3631 | 20.6417 |
| INF2 | Developing inflorescences (1-1.5 cm) | 11.8254 | 18.7835 | 13.1055 | 21.487 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 5.34504 | 7.05092 | 6.94689 | 10.7753 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.080055 | 0.0671797 | 0.027066 | 0.226788 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 6.62367 | 7.87945 | 8.39676 | 9.95072 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.344673 | 0.323001 | 0.712815 | 1.2302 |
CDS Structure of MLOC_6947
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_6947.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g07180.1 |
+3 |
4e-106 |
331 |
230/460 (50%) |
13102.m00809 protein expressed protein |
| TAIR PP10 |
AT1G06660.1 |
+3 |
2e-16 |
83 |
44/84 (52%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:2037461-2040148 REVERSE LENGTH=481 |
