MLOC_69359 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.584419.396189.565526.47929
LEAShoots from the seedlings (10 cm shoot stage)8.970497.181829.496975.85808
INF1Young developing inflorescences (5mm)19.992421.000722.192612.7961
INF2Developing inflorescences (1-1.5 cm)24.575120.258625.242319.3273
ROORoots from the seedlings (10 cm shoot stage)2.846399.98059.827997.55918
NODDeveloping tillers at six leaf stage, 3rd internode3.337943.379516.4250610.1687
CAR5Developing grain, bracts removed (5 DPA)4.678875.376595.189933.61492
CAR15Developing grain, bracts removed (15 DPA)8.728928.91918.0132613.9445



CDS Structure of MLOC_69359






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69359.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_69359.6CUST_9317_PI427708083AvailableAvailablecontig_56308 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g01940.1 +3 1e-26 108 68/109 (62%) 13107.m00116 protein sister chromatid cohesion 2, putative, expressed
TAIR PP10 AT5G15540.1 +3 7e-18 82 54/110 (49%) | Symbols: EMB2773, ATSCC2, SCC2 | PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1846