MLOC_6916 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.403245.7683.455253.22993
LEAShoots from the seedlings (10 cm shoot stage)6.553813.445285.714963.44444
INF1Young developing inflorescences (5mm)12.89389.3125610.51956.80661
INF2Developing inflorescences (1-1.5 cm)10.605812.962110.15069.50788
ROORoots from the seedlings (10 cm shoot stage)5.35.235723.838224.21681
NODDeveloping tillers at six leaf stage, 3rd internode1.20511.295082.685053.58593
CAR5Developing grain, bracts removed (5 DPA)8.627789.297310.13256.3286
CAR15Developing grain, bracts removed (15 DPA)2.988872.677732.658924.67532



CDS Structure of MLOC_6916






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6916.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6916.1CUST_13057_PI427708083AvailableAvailablecontig_138325 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40600.1 +2 2e-38 142 68/69 (99%) 13106.m04222 protein elongation factor, putative, expressed
TAIR PP10 AT1G06220.1 +2 1e-32 125 58/69 (84%) | Symbols: MEE5, CLO, GFA1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987