- Predicted Gene MLOC_69078
MLOC_69078 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 7.08532 | 8.44875 | 9.08572 | 9.15695 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 51.6785 | 76.216 | 67.1013 | 59.1959 |
| INF1 | Young developing inflorescences (5mm) | 9.25799 | 11.1855 | 13.2297 | 10.8927 |
| INF2 | Developing inflorescences (1-1.5 cm) | 15.7939 | 13.8683 | 20.0868 | 19.8131 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 4.13158 | 4.69515 | 5.5757 | 6.26839 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 79.5477 | 75.3634 | 67.7514 | 237.443 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 23.2011 | 23.657 | 19.052 | 24.8522 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 1.92263 | 1.76598 | 1.73906 | 4.89568 |
CDS Structure of MLOC_69078
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_69078.8
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g51290.3 |
+1 |
0.0 |
600 |
326/396 (82%) |
13106.m05535 protein phytoene synthase, chloroplast precursor, putative, expressed |
| TAIR PP10 |
AT5G17230.2 |
+1 |
2e-169 |
497 |
265/355 (75%) |
| Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=422 |
