MLOC_69075 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.365611.10559.9267511.995
LEAShoots from the seedlings (10 cm shoot stage)8.316745.273576.473346.15609
INF1Young developing inflorescences (5mm)25.728423.807220.311220.8743
INF2Developing inflorescences (1-1.5 cm)20.823419.178417.326222.8786
ROORoots from the seedlings (10 cm shoot stage)3.8775111.33368.5589813.6075
NODDeveloping tillers at six leaf stage, 3rd internode0.3730970.2757340.8414051.2486
CAR5Developing grain, bracts removed (5 DPA)16.890817.302917.863418.8328
CAR15Developing grain, bracts removed (15 DPA)8.913638.591125.9109120.4024



CDS Structure of MLOC_69075






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69075.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_69075.2CUST_15337_PI427708080AvailableAvailablecontig_55885 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g29660.1 +3 0.0 882 510/580 (88%) 13112.m03017 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT4G16630.1 +3 0.0 692 407/596 (68%) DEA(D/H)-box RNA helicase family protein | chr4:9362176-9366449 REVERSE LENGTH=789