MLOC_69020 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains103.39373.659781.5125100.424
LEAShoots from the seedlings (10 cm shoot stage)11.842214.679814.261513.9357
INF1Young developing inflorescences (5mm)22.050925.986631.425727.4155
INF2Developing inflorescences (1-1.5 cm)21.856921.98523.509428.7605
ROORoots from the seedlings (10 cm shoot stage)83.722757.298456.903992.1034
NODDeveloping tillers at six leaf stage, 3rd internode14.864120.673614.995473.7132
CAR5Developing grain, bracts removed (5 DPA)10.617710.271410.396712.2016
CAR15Developing grain, bracts removed (15 DPA)7.426866.516886.4123718.6218



CDS Structure of MLOC_69020






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_69020.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250091.1NoneNoneNoneNone
MLOC_69020.1CUST_5714_PI427708080AvailableAvailablecontig_55763 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g58040.3 +1 0.0 809 398/411 (97%) 13103.m06374 protein glutamate dehydrogenase protein, putative, expressed
TAIR PP10 AT5G18170.1 +1 0.0 729 348/411 (85%) | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:6006172-6008248 FORWARD LENGTH=411