MLOC_68852 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.858955.934646.107167.02107
LEAShoots from the seedlings (10 cm shoot stage)4.21982.432013.251923.15078
INF1Young developing inflorescences (5mm)9.3227710.549410.84029.35271
INF2Developing inflorescences (1-1.5 cm)10.79311.790210.137812.7918
ROORoots from the seedlings (10 cm shoot stage)2.108293.729423.33154.81532
NODDeveloping tillers at six leaf stage, 3rd internode1.571432.132592.432528.12943
CAR5Developing grain, bracts removed (5 DPA)7.374747.331537.845887.90456
CAR15Developing grain, bracts removed (15 DPA)1.814881.762552.098744.57698



CDS Structure of MLOC_68852






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68852.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_68852.1CUST_15310_PI427708080AvailableAvailablecontig_55462 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08300.2 +3 5e-116 340 207/287 (72%) 13102.m00956 protein RAD23 DNA repair protein, putative, expressed
TAIR PP10 AT1G79650.2 +3 9e-95 280 176/285 (62%) | Symbols: RAD23, RAD23B | Rad23 UV excision repair protein family | chr1:29972406-29975132 REVERSE LENGTH=365