MLOC_68842 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains36.126831.672731.077944.1545
LEAShoots from the seedlings (10 cm shoot stage)27.295411.911613.047116.9797
INF1Young developing inflorescences (5mm)15.243819.003523.344420.8211
INF2Developing inflorescences (1-1.5 cm)19.053117.230320.376725.9339
ROORoots from the seedlings (10 cm shoot stage)29.35733.631326.722557.1763
NODDeveloping tillers at six leaf stage, 3rd internode60.675168.768358.539280.403
CAR5Developing grain, bracts removed (5 DPA)28.604431.071329.286739.2354
CAR15Developing grain, bracts removed (15 DPA)5.121474.321794.9992814.1475



CDS Structure of MLOC_68842






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68842.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363534NoneNoneNoneNone
MLOC_68842.2CUST_5688_PI427708080AvailableAvailablecontig_55447 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g45910.1 +2 0.0 618 292/329 (89%) 13104.m04606 protein placental protein 11 precursor, putative, expressed
TAIR PP10 AT4G17100.1 +2 9e-161 473 224/330 (68%) CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | chr4:9610164-9612513 REVERSE LENGTH=434