- Predicted Gene MLOC_68842
MLOC_68842 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_68842_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 36.1268 | 31.6727 | 31.0779 | 44.1545 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 27.2954 | 11.9116 | 13.0471 | 16.9797 |
INF1 | Young developing inflorescences (5mm) | 15.2438 | 19.0035 | 23.3444 | 20.8211 |
INF2 | Developing inflorescences (1-1.5 cm) | 19.0531 | 17.2303 | 20.3767 | 25.9339 |
ROO | Roots from the seedlings (10 cm shoot stage) | 29.357 | 33.6313 | 26.7225 | 57.1763 |
NOD | Developing tillers at six leaf stage, 3rd internode | 60.6751 | 68.7683 | 58.539 | 280.403 |
CAR5 | Developing grain, bracts removed (5 DPA) | 28.6044 | 31.0713 | 29.2867 | 39.2354 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.12147 | 4.32179 | 4.99928 | 14.1475 |
CDS Structure of MLOC_68842
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_68842.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g45910.1 |
+2 |
0.0 |
618 |
292/329 (89%) |
13104.m04606 protein placental protein 11 precursor, putative, expressed |
TAIR PP10 |
AT4G17100.1 |
+2 |
9e-161 |
473 |
224/330 (68%) |
CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | chr4:9610164-9612513 REVERSE LENGTH=434 |