MLOC_68838 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.447811.339211.524514.3708
LEAShoots from the seedlings (10 cm shoot stage)14.644617.079517.088214.274
INF1Young developing inflorescences (5mm)6.960135.487865.833876.12511
INF2Developing inflorescences (1-1.5 cm)8.988487.739768.3401710.5687
ROORoots from the seedlings (10 cm shoot stage)28.652916.37316.489622.431
NODDeveloping tillers at six leaf stage, 3rd internode10.545217.933510.77142.5955
CAR5Developing grain, bracts removed (5 DPA)10.326817.124811.672515.6088
CAR15Developing grain, bracts removed (15 DPA)2.017221.864112.141735.65843



CDS Structure of MLOC_68838






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68838.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_68838.1CUST_17805_PI427708080AvailableAvailablecontig_55442 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g30160.1 +2 1e-42 149 108/147 (73%) 13109.m03007 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT2G04240.2 +2 6e-16 75 51/146 (35%) | Symbols: XERICO | RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162