- Predicted Gene MLOC_68802
MLOC_68802 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 23.6933 | 28.5636 | 27.9068 | 28.3374 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 15.5286 | 9.65111 | 13.5724 | 11.9936 |
| INF1 | Young developing inflorescences (5mm) | 51.9278 | 49.7529 | 50.0419 | 44.7982 |
| INF2 | Developing inflorescences (1-1.5 cm) | 40.6521 | 44.8509 | 39.8027 | 48.3802 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 20.4219 | 26.7034 | 20.169 | 33.1344 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 5.54055 | 7.43793 | 12.5819 | 30.2558 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 46.9898 | 51.8206 | 51.9078 | 51.4948 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 6.02115 | 7.55866 | 7.00113 | 16.0003 |
CDS Structure of MLOC_68802
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_68802.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g30550.1 |
+3 |
9e-154 |
460 |
302/560 (54%) |
13103.m03495 protein RNA-binding protein-like, putative, expressed |
| TAIR PP10 |
AT3G25150.1 |
+3 |
9e-61 |
214 |
156/469 (33%) |
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9159362 REVERSE LENGTH=488 |
