MLOC_68788 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.440815.069713.935113.0021
LEAShoots from the seedlings (10 cm shoot stage)18.1418.850120.200216.2695
INF1Young developing inflorescences (5mm)24.953227.25326.419420.4082
INF2Developing inflorescences (1-1.5 cm)28.676532.825829.859731.8747
ROORoots from the seedlings (10 cm shoot stage)5.46459.936515.5261610.5342
NODDeveloping tillers at six leaf stage, 3rd internode10.769414.23714.969451.1698
CAR5Developing grain, bracts removed (5 DPA)21.508920.876523.121720.1497
CAR15Developing grain, bracts removed (15 DPA)9.282149.0453510.397519.3086



CDS Structure of MLOC_68788






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68788.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_68788.2CUST_15300_PI427708080AvailableAvailablecontig_55354 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g24440.1 +1 0.0 644 396/595 (67%) 13109.m02320 protein expressed protein
TAIR PP10 AT1G73960.1 +1 2e-95 322 196/478 (41%) | Symbols: TAF2 | TBP-associated factor 2 | chr1:27805173-27814433 REVERSE LENGTH=1390