MLOC_68712 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.397836.864027.275757.28739
LEAShoots from the seedlings (10 cm shoot stage)13.90336.3317.565398.53325
INF1Young developing inflorescences (5mm)12.143413.79615.482712.6824
INF2Developing inflorescences (1-1.5 cm)17.68414.796318.105619.9779
ROORoots from the seedlings (10 cm shoot stage)21.17358.996618.3943614.2676
NODDeveloping tillers at six leaf stage, 3rd internode7.362868.089999.5209430.6803
CAR5Developing grain, bracts removed (5 DPA)14.201313.01312.449814.4258
CAR15Developing grain, bracts removed (15 DPA)7.452167.862917.1933619.6598



CDS Structure of MLOC_68712






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68712.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375369NoneNoneNoneNone
MLOC_68712.5CUST_18367_PI427708080AvailableAvailablecontig_55118 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40900.1 -3 6e-100 301 195/239 (82%) 13102.m04566 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT3G04500.1 -3 3e-63 206 141/254 (56%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:1212065-1213795 REVERSE LENGTH=245