MLOC_68652 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.881211.069712.665912.3366
LEAShoots from the seedlings (10 cm shoot stage)11.32458.230128.862268.23877
INF1Young developing inflorescences (5mm)24.979626.208824.437121.672
INF2Developing inflorescences (1-1.5 cm)21.720318.056218.984422.1938
ROORoots from the seedlings (10 cm shoot stage)8.2014711.732110.353714.0788
NODDeveloping tillers at six leaf stage, 3rd internode6.744887.804059.5592127.8754
CAR5Developing grain, bracts removed (5 DPA)18.160420.015620.228920.159
CAR15Developing grain, bracts removed (15 DPA)5.318355.920776.0003813.5992



CDS Structure of MLOC_68652






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68652.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252289.1NoneNoneNoneNone
MLOC_68652.1CUST_5663_PI427708080AvailableAvailablecontig_55111 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g13030.1 -2 2e-128 384 202/352 (57%) 13108.m01392 protein MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain
TAIR PP10 AT5G19000.1 -2 4e-79 257 154/376 (41%) | Symbols: ATBPM1, BPM1 | BTB-POZ and MATH domain 1 | chr5:6342563-6344641 FORWARD LENGTH=407