MLOC_68578 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.998913.50413.370313.50012
LEAShoots from the seedlings (10 cm shoot stage)2.502282.072812.326191.93279
INF1Young developing inflorescences (5mm)7.159767.504187.841566.47863
INF2Developing inflorescences (1-1.5 cm)8.927849.554478.3183310.2909
ROORoots from the seedlings (10 cm shoot stage)3.189044.01822.748494.58264
NODDeveloping tillers at six leaf stage, 3rd internode0.969151.930822.306976.27293
CAR5Developing grain, bracts removed (5 DPA)3.6613.987993.771913.88489
CAR15Developing grain, bracts removed (15 DPA)0.9100110.7851760.8691072.07491



CDS Structure of MLOC_68578






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68578.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366419NoneNoneNoneNone
MLOC_68578.1CUST_5655_PI427708080AvailableAvailablecontig_54984 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37630.1 -3 0.0 984 475/598 (79%) 13112.m03872 protein domain of unknown function family protein, expressed
TAIR PP10 AT1G09280.1 -3 0.0 694 350/598 (59%) CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). | chr1:2998209-3001253 REVERSE LENGTH=581