MLOC_68577 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.754313.269812.295814.1153
LEAShoots from the seedlings (10 cm shoot stage)23.819720.42920.575919.4903
INF1Young developing inflorescences (5mm)10.6619.6683410.00889.51871
INF2Developing inflorescences (1-1.5 cm)9.5595910.02310.651112.4868
ROORoots from the seedlings (10 cm shoot stage)0.8610893.614092.900564.29396
NODDeveloping tillers at six leaf stage, 3rd internode1.49563.069699.0686314.119
CAR5Developing grain, bracts removed (5 DPA)7.117197.675496.39828.19439
CAR15Developing grain, bracts removed (15 DPA)0.9900440.5517350.7884142.04402



CDS Structure of MLOC_68577






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68577.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358993NoneNoneNoneNone
MLOC_68577.1CUST_5654_PI427708080AvailableAvailablecontig_54984 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37610.1 +1 1e-111 340 196/259 (76%) 13112.m03870 protein ribosomal protein S6, putative, expressed
TAIR PP10 AT3G17170.1 +1 2e-75 245 117/179 (65%) | Symbols: RFC3 | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr3:5853186-5854853 REVERSE LENGTH=314