MLOC_68568 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains57.673750.042142.344354.4421
LEAShoots from the seedlings (10 cm shoot stage)15.75472.264135.042026.24434
INF1Young developing inflorescences (5mm)96.3355100.00885.881992.9142
INF2Developing inflorescences (1-1.5 cm)72.957395.670396.5813114.982
ROORoots from the seedlings (10 cm shoot stage)90.556171.418889.763191.833
NODDeveloping tillers at six leaf stage, 3rd internode1.03881.587321.484984.26414
CAR5Developing grain, bracts removed (5 DPA)46.360652.400237.071453.0708
CAR15Developing grain, bracts removed (15 DPA)8.494665.170346.0293317.8223



CDS Structure of MLOC_68568






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68568.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368754NoneNoneNoneNone
MLOC_68568.1CUST_5652_PI427708080AvailableAvailablecontig_54973 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02300.1 +3 2e-48 160 97/106 (92%) 13105.m00194 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 +3 5e-45 150 91/106 (86%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153