MLOC_6853 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.523474.253093.481673.70782
LEAShoots from the seedlings (10 cm shoot stage)2.027340.4926920.458680.927107
INF1Young developing inflorescences (5mm)18.802619.086716.564815.2657
INF2Developing inflorescences (1-1.5 cm)17.857320.109516.049420.0963
ROORoots from the seedlings (10 cm shoot stage)0.7729522.291741.304842.57453
NODDeveloping tillers at six leaf stage, 3rd internode0.4441440.6612561.020692.60144
CAR5Developing grain, bracts removed (5 DPA)6.929297.013956.820156.71655
CAR15Developing grain, bracts removed (15 DPA)1.542541.472011.360073.29596



CDS Structure of MLOC_6853






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6853.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6853.3CUST_15265_PI427708080AvailableAvailablecontig_138198 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g19190.1 +3 0.0 587 306/532 (58%) 13103.m02293 protein TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed
TAIR PP10 AT4G02110.1 +3 2e-89 319 194/504 (38%) transcription coactivators | chr4:935191-940191 FORWARD LENGTH=1329