MLOC_68525 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2900650.5781490.3747550.447987
LEAShoots from the seedlings (10 cm shoot stage)0.3318130.4561780.7441530.452066
INF1Young developing inflorescences (5mm)0.1064910.1055180.1469750.0942589
INF2Developing inflorescences (1-1.5 cm)0.7737240.6981531.180660.867979
ROORoots from the seedlings (10 cm shoot stage)0.7224921.25180.7609191.39862
NODDeveloping tillers at six leaf stage, 3rd internode0.0582220.2027180.09333010.669462
CAR5Developing grain, bracts removed (5 DPA)1.904711.680911.574751.60178
CAR15Developing grain, bracts removed (15 DPA)0.6238980.9581790.4711431.53008



CDS Structure of MLOC_68525






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68525.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_68525.2CUST_15264_PI427708080AvailableAvailablecontig_54912 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01740.1 +1 0.0 1951 987/1181 (84%) 13102.m00099 protein U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
TAIR PP10 AT1G20960.2 +1 0.0 1631 829/1188 (70%) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171