MLOC_68494 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.2061820.482916.399515.9967
LEAShoots from the seedlings (10 cm shoot stage)14.648612.18111.93710.8019
INF1Young developing inflorescences (5mm)21.868521.294719.63717.3927
INF2Developing inflorescences (1-1.5 cm)18.656520.603514.761720.2278
ROORoots from the seedlings (10 cm shoot stage)9.1630611.61368.2278312.7051
NODDeveloping tillers at six leaf stage, 3rd internode4.089915.632346.9580419.6085
CAR5Developing grain, bracts removed (5 DPA)15.028914.344414.233413.917
CAR15Developing grain, bracts removed (15 DPA)2.957763.470283.046967.44194



CDS Structure of MLOC_68494






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68494.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_68494.1CUST_15260_PI427708080AvailableAvailablecontig_54872 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g10244.1 -2 0.0 850 409/484 (85%) 13110.m00919 protein alanyl-tRNA synthetase, putative, expressed
TAIR PP10 AT1G50200.1 -2 0.0 729 350/482 (73%) | Symbols: ALATS, ACD | Alanyl-tRNA synthetase | chr1:18591429-18598311 REVERSE LENGTH=1003