MLOC_68493 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.541633.241693.831633.35834
LEAShoots from the seedlings (10 cm shoot stage)3.347012.61953.610673.00442
INF1Young developing inflorescences (5mm)6.078275.072315.18354.72835
INF2Developing inflorescences (1-1.5 cm)4.174835.291744.641035.41023
ROORoots from the seedlings (10 cm shoot stage)1.470732.599441.886683.20364
NODDeveloping tillers at six leaf stage, 3rd internode1.158811.448492.091595.82006
CAR5Developing grain, bracts removed (5 DPA)4.061893.444314.057053.84744
CAR15Developing grain, bracts removed (15 DPA)0.96590.9295151.012032.21102



CDS Structure of MLOC_68493






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68493.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_68493.1CUST_15259_PI427708080AvailableAvailablecontig_54872 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g10244.1 -2 0.0 660 378/489 (77%) 13110.m00919 protein alanyl-tRNA synthetase, putative, expressed
TAIR PP10 AT1G50200.1 -2 1e-170 514 290/496 (58%) | Symbols: ALATS, ACD | Alanyl-tRNA synthetase | chr1:18591429-18598311 REVERSE LENGTH=1003