MLOC_68482 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.201244.08639.362538.5246
LEAShoots from the seedlings (10 cm shoot stage)46.048748.903440.633941.5336
INF1Young developing inflorescences (5mm)53.746853.967153.122345.5284
INF2Developing inflorescences (1-1.5 cm)72.865669.516262.277677.1838
ROORoots from the seedlings (10 cm shoot stage)18.19539.816926.98747.754
NODDeveloping tillers at six leaf stage, 3rd internode26.647530.439524.3837105.99
CAR5Developing grain, bracts removed (5 DPA)69.786362.854271.963968.2482
CAR15Developing grain, bracts removed (15 DPA)52.91148.625549.6941114.866



CDS Structure of MLOC_68482






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68482.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370139NoneNoneNoneNone
MLOC_68482.4CUST_5640_PI427708080AvailableAvailablecontig_54855 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g01960.1 +1 0.0 1817 1027/1354 (76%) 13101.m00126 protein transcriptional repressor, putative, expressed
TAIR PP10 AT3G01320.1 +1 0.0 1028 650/1413 (46%) | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197 FORWARD LENGTH=1372