MLOC_68440 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.853421.760522.101523.1708
LEAShoots from the seedlings (10 cm shoot stage)26.629123.808224.738122.7661
INF1Young developing inflorescences (5mm)43.872348.672154.301943.413
INF2Developing inflorescences (1-1.5 cm)67.426768.77466.487275.939
ROORoots from the seedlings (10 cm shoot stage)26.508727.814328.37237.1675
NODDeveloping tillers at six leaf stage, 3rd internode19.275424.742536.931990.9703
CAR5Developing grain, bracts removed (5 DPA)32.148233.052630.251832.4031
CAR15Developing grain, bracts removed (15 DPA)32.215733.911629.728177.4708



CDS Structure of MLOC_68440






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68440.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355936NoneNoneNoneNone
MLOC_68440.1CUST_5638_PI427708080AvailableAvailablecontig_54798 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g10710.2 +1 0.0 529 321/408 (79%) 13109.m00946 protein R-interacting factor 1, putative, expressed
TAIR PP10 AT5G13020.1 +1 2e-103 324 207/448 (46%) Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397