MLOC_68418 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3530481.30710.692831.00384
LEAShoots from the seedlings (10 cm shoot stage)3.649341.301881.978642.26927
INF1Young developing inflorescences (5mm)4.87276.594155.900774.97326
INF2Developing inflorescences (1-1.5 cm)12.03048.364969.192610.8731
ROORoots from the seedlings (10 cm shoot stage)0.3364581.032580.641881.27218
NODDeveloping tillers at six leaf stage, 3rd internode0.9930991.708451.685746.45479
CAR5Developing grain, bracts removed (5 DPA)5.634734.525485.068915.05557
CAR15Developing grain, bracts removed (15 DPA)1.430811.810671.980423.78628



CDS Structure of MLOC_68418






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68418.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_68418.2CUST_9203_PI427708083AvailableAvailablecontig_54754 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g36470.1 +3 3e-167 496 282/314 (90%) 13111.m03573 protein ubiquitin carboxyl-terminal hydrolase 21, putative, expressed
TAIR PP10 AT5G06600.3 +3 9e-135 412 239/313 (76%) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985