MLOC_68417 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.12150.5551010.04466930.569954
LEAShoots from the seedlings (10 cm shoot stage)0.1034090.06265290.1917910.104076
INF1Young developing inflorescences (5mm)0.07431690.0897950.0631530.0761187
INF2Developing inflorescences (1-1.5 cm)0.05482160.02623460.3482330.159256
ROORoots from the seedlings (10 cm shoot stage)2.123662.26251.46352.64919
NODDeveloping tillers at six leaf stage, 3rd internode0.1263250.2070370.5887690.901387
CAR5Developing grain, bracts removed (5 DPA)0.4858730.5261520.7276440.697163
CAR15Developing grain, bracts removed (15 DPA)2.756132.203661.934046.56455



CDS Structure of MLOC_68417






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68417.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366460NoneNoneNoneNone
MLOC_68417.1CUST_18363_PI427708080AvailableAvailablecontig_54752 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13800.1 -2 2e-78 249 142/214 (66%) 13102.m01534 protein HSF-type DNA-binding domain containing protein, expressed
TAIR PP10 AT3G24520.1 -2 2e-54 186 100/199 (50%) | Symbols: AT-HSFC1, HSFC1 | heat shock transcription factor C1 | chr3:8941455-8942531 FORWARD LENGTH=330