MLOC_68259 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)000.06525340.0499122
INF1Young developing inflorescences (5mm)0.0274567000.025117
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode000.009181330.0202642
CAR5Developing grain, bracts removed (5 DPA)28.037834.645226.094928.4897
CAR15Developing grain, bracts removed (15 DPA)3.620484.584723.619369.97018



CDS Structure of MLOC_68259






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68259.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372398NoneNoneNoneNone
MLOC_68259.1CUST_5611_PI427708080AvailableAvailablecontig_54476 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21040.1 +2 8e-22 100 121/413 (29%) 13102.m02357 protein aspartic proteinase nepenthesin precursor, putative, expressed
TAIR PP10 AT2G42980.1 +2 1e-17 86 105/384 (27%) Eukaryotic aspartyl protease family protein | chr2:17875005-17876588 REVERSE LENGTH=527