MLOC_68180 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.394617.499415.288519.2999
LEAShoots from the seedlings (10 cm shoot stage)15.81154.322837.071447.60156
INF1Young developing inflorescences (5mm)11.87427.016637.535998.37482
INF2Developing inflorescences (1-1.5 cm)3.396254.18784.109974.98788
ROORoots from the seedlings (10 cm shoot stage)1.332792.638362.949213.43002
NODDeveloping tillers at six leaf stage, 3rd internode0.4700450.4327580.5571171.34891
CAR5Developing grain, bracts removed (5 DPA)6.062145.652815.733086.72092
CAR15Developing grain, bracts removed (15 DPA)0.3473510.1774310.3319790.779338



CDS Structure of MLOC_68180






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68180.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376416NoneNoneNoneNone
MLOC_68180.4CUST_5599_PI427708080AvailableAvailablecontig_54338 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29110.1 -2 1e-76 236 127/189 (67%) 13108.m03007 protein thioredoxin, putative, expressed
TAIR PP10 AT3G06730.1 -2 1e-59 191 86/119 (72%) | Symbols: TRX P, TRX z | Thioredoxin z | chr3:2124276-2125845 FORWARD LENGTH=183