MLOC_68142 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.292782.477782.084082.81839
LEAShoots from the seedlings (10 cm shoot stage)3.840162.719051.838872.65831
INF1Young developing inflorescences (5mm)0.1527230.09951420.1179160.118035
INF2Developing inflorescences (1-1.5 cm)0.520140.643750.7959970.803721
ROORoots from the seedlings (10 cm shoot stage)0.1406220.8239950.3173611.03043
NODDeveloping tillers at six leaf stage, 3rd internode0.08281470.1674360.07388350.548086
CAR5Developing grain, bracts removed (5 DPA)5.044335.112285.851516.05769
CAR15Developing grain, bracts removed (15 DPA)8.22747.688268.8347521.6744



CDS Structure of MLOC_68142






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68142.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248978.1NoneNoneNoneNone
MLOC_68142.1CUST_18361_PI427708080AvailableAvailablecontig_54271 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g18470.1 +3 3e-116 345 173/266 (65%) 13105.m01949 protein CRAL/TRIO domain containing protein, expressed
TAIR PP10 AT4G08690.1 +3 7e-69 223 112/254 (44%) Sec14p-like phosphatidylinositol transfer family protein | chr4:5551521-5552713 REVERSE LENGTH=301