MLOC_68062 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.543353.499244.586983.46232
LEAShoots from the seedlings (10 cm shoot stage)10.87837.490616.839626.83492
INF1Young developing inflorescences (5mm)0.9503920.8994030.948360.719828
INF2Developing inflorescences (1-1.5 cm)4.510723.147174.184763.83476
ROORoots from the seedlings (10 cm shoot stage)11.771718.730211.715418.3732
NODDeveloping tillers at six leaf stage, 3rd internode9.360399.9302924.423934.8223
CAR5Developing grain, bracts removed (5 DPA)14.908615.876717.446713.9489
CAR15Developing grain, bracts removed (15 DPA)59.06760.550258.0885124.228



CDS Structure of MLOC_68062






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68062.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374026NoneNoneNoneNone
MLOC_68062.1CUST_5585_PI427708080AvailableAvailablecontig_54127 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g37800.1 +3 0.0 748 370/477 (78%) 13108.m03989 protein CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT3G01090.3 +3 0.0 635 325/482 (67%) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512