- Predicted Gene MLOC_68007
MLOC_68007 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.94786 | 6.1974 | 6.9377 | 7.20955 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 4.25204 | 7.42872 | 9.29173 | 6.89271 |
| INF1 | Young developing inflorescences (5mm) | 0.0561445 | 0.0634915 | 0.042474 | 0.0557489 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.11431 | 0.107722 | 0.0427252 | 0.125731 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 24.4344 | 15.6631 | 20.7927 | 23.6297 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 1.15536 | 1.33855 | 1.90189 | 4.90098 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 5.88663 | 5.71983 | 5.82249 | 6.97968 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 18.2619 | 17.7615 | 15.5656 | 48.4242 |
CDS Structure of MLOC_68007
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_68007.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g39890.1 |
+3 |
4e-143 |
448 |
376/781 (48%) |
13101.m04081 protein transposon protein, putative, unclassified, expressed |
| TAIR PP10 |
AT3G25690.2 |
+3 |
7e-24 |
108 |
89/279 (32%) |
| Symbols: CHUP1 | Hydroxyproline-rich glycoprotein family protein | chr3:9354061-9357757 FORWARD LENGTH=1004 |
