MLOC_68001 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains150.427123.667121.975137.555
LEAShoots from the seedlings (10 cm shoot stage)86.088777.880562.846765.0208
INF1Young developing inflorescences (5mm)144.096155.17147.606134.841
INF2Developing inflorescences (1-1.5 cm)124.049133.861136.466152.007
ROORoots from the seedlings (10 cm shoot stage)86.001385.310481.415104.342
NODDeveloping tillers at six leaf stage, 3rd internode73.72784.748496.2722300.414
CAR5Developing grain, bracts removed (5 DPA)176.768198.281195.873196.793
CAR15Developing grain, bracts removed (15 DPA)31.536132.189431.892679.3884



CDS Structure of MLOC_68001






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68001.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251319.1NoneNoneNoneNone
MLOC_68001.1CUST_5578_PI427708080AvailableAvailablecontig_54046 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g57040.1 +2 0.0 723 352/380 (93%) 13102.m06560 protein dehydrogenase, putative, expressed
TAIR PP10 AT5G43940.1 +2 0.0 688 338/374 (90%) | Symbols: HOT5, ADH2, GSNOR, ATGSNOR1, PAR2 | GroES-like zinc-binding dehydrogenase family protein | chr5:17684265-17686379 FORWARD LENGTH=379