MLOC_68000 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.761651.510691.447881.52026
LEAShoots from the seedlings (10 cm shoot stage)21.321742.257739.680127.1094
INF1Young developing inflorescences (5mm)2.30022.583762.802412.1165
INF2Developing inflorescences (1-1.5 cm)2.420942.945742.564152.97901
ROORoots from the seedlings (10 cm shoot stage)1.228541.036841.709511.27549
NODDeveloping tillers at six leaf stage, 3rd internode9.922459.5020624.633239.6077
CAR5Developing grain, bracts removed (5 DPA)3.69445.331924.037624.37814
CAR15Developing grain, bracts removed (15 DPA)0.5081861.084181.285642.1339



CDS Structure of MLOC_68000






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_68000.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356538NoneNoneNoneNone
MLOC_68000.5CUST_5577_PI427708080AvailableAvailablecontig_54046 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g57030.1 +3 7e-90 281 195/259 (75%) 13102.m06557 protein expressed protein
TAIR PP10 AT5G37360.1 +3 1e-41 152 93/186 (50%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14805437-14808113 REVERSE LENGTH=309