- Predicted Gene MLOC_68000
MLOC_68000 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.76165 | 1.51069 | 1.44788 | 1.52026 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 21.3217 | 42.2577 | 39.6801 | 27.1094 |
INF1 | Young developing inflorescences (5mm) | 2.3002 | 2.58376 | 2.80241 | 2.1165 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.42094 | 2.94574 | 2.56415 | 2.97901 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.22854 | 1.03684 | 1.70951 | 1.27549 |
NOD | Developing tillers at six leaf stage, 3rd internode | 9.92245 | 9.50206 | 24.6332 | 39.6077 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.6944 | 5.33192 | 4.03762 | 4.37814 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.508186 | 1.08418 | 1.28564 | 2.1339 |
CDS Structure of MLOC_68000
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_68000.5
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g57030.1 |
+3 |
7e-90 |
281 |
195/259 (75%) |
13102.m06557 protein expressed protein |
TAIR PP10 |
AT5G37360.1 |
+3 |
1e-41 |
152 |
93/186 (50%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14805437-14808113 REVERSE LENGTH=309 |