MLOC_67931 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains51.786142.496543.748355.3364
LEAShoots from the seedlings (10 cm shoot stage)24.538623.806127.581425.7708
INF1Young developing inflorescences (5mm)13.429513.987913.146313.8117
INF2Developing inflorescences (1-1.5 cm)9.220199.1636612.201413.1747
ROORoots from the seedlings (10 cm shoot stage)43.195242.977449.461866.5958
NODDeveloping tillers at six leaf stage, 3rd internode56.340.68829.5077150.191
CAR5Developing grain, bracts removed (5 DPA)21.68128.518924.461130.8421
CAR15Developing grain, bracts removed (15 DPA)7.34727.56498.9208921.7811



CDS Structure of MLOC_67931






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_67931.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_67931.1CUST_15177_PI427708080AvailableAvailablecontig_53920 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g38080.1 +2 1e-66 209 108/133 (81%) 13109.m03788 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT2G44360.1 +2 2e-49 160 79/119 (66%) unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18320855-18321584 REVERSE LENGTH=135