MLOC_67781 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.546621.71631.952481.46375
LEAShoots from the seedlings (10 cm shoot stage)13.821811.138210.15738.64192
INF1Young developing inflorescences (5mm)2.821382.976423.177822.0236
INF2Developing inflorescences (1-1.5 cm)4.386284.484515.21374.33639
ROORoots from the seedlings (10 cm shoot stage)8.6904110.08169.6079910.0948
NODDeveloping tillers at six leaf stage, 3rd internode4.624245.70985.4116515.6076
CAR5Developing grain, bracts removed (5 DPA)5.292166.124186.247754.79727
CAR15Developing grain, bracts removed (15 DPA)7.40165.995638.3763513.6161



CDS Structure of MLOC_67781






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_67781.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251779.1NoneNoneNoneNone
MLOC_67781.1CUST_5545_PI427708080AvailableAvailablecontig_53621 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g41720.2 -2 8e-98 319 198/307 (64%) 13107.m04353 protein nuclear transcription factor Y subunit, putative, expressed
TAIR PP10 AT3G32930.1 +3 4e-43 111 51/69 (74%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:13489595-13490704 FORWARD LENGTH=249