- Predicted Gene MLOC_67779
MLOC_67779 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 28.0324 | 56.9943 | 50.5547 | 41.7665 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 50.6652 | 36.551 | 36.7662 | 32.8312 |
INF1 | Young developing inflorescences (5mm) | 104.608 | 109.432 | 98.8792 | 77.0679 |
INF2 | Developing inflorescences (1-1.5 cm) | 85.1549 | 93.0185 | 85.3779 | 87.7447 |
ROO | Roots from the seedlings (10 cm shoot stage) | 24.6219 | 45.3441 | 35.4099 | 43.3997 |
NOD | Developing tillers at six leaf stage, 3rd internode | 21.5827 | 20.8869 | 23.5075 | 65.5341 |
CAR5 | Developing grain, bracts removed (5 DPA) | 77.4374 | 73.9181 | 80.0314 | 66.7314 |
CAR15 | Developing grain, bracts removed (15 DPA) | 37.4526 | 34.0956 | 32.3739 | 70.7065 |
CDS Structure of MLOC_67779
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_67779.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g07120.1 |
-2 |
0.0 |
2008 |
1113/1219 (91%) |
13102.m00801 protein HEAT repeat family protein, putative, expressed |
TAIR PP10 |
AT2G02560.2 |
-2 |
0.0 |
1676 |
922/1221 (76%) |
| Symbols: CAND1, ATCAND1, ETA2, TIP120, HVE | cullin-associated and neddylation dissociated | chr2:690345-697342 FORWARD LENGTH=1217 |