MLOC_67498 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.227311.43689.760858.31795
LEAShoots from the seedlings (10 cm shoot stage)8.69275.880035.587775.64213
INF1Young developing inflorescences (5mm)28.710728.340526.875621.4
INF2Developing inflorescences (1-1.5 cm)26.449228.007125.442327.1866
ROORoots from the seedlings (10 cm shoot stage)3.397637.881875.60897.95464
NODDeveloping tillers at six leaf stage, 3rd internode2.251513.483645.8274813.0193
CAR5Developing grain, bracts removed (5 DPA)18.118517.239319.307415.9916
CAR15Developing grain, bracts removed (15 DPA)7.490636.786347.0714414.5262



CDS Structure of MLOC_67498






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_67498.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_67498.3CUST_15114_PI427708080AvailableAvailablecontig_53178 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48602.1 +3 5e-60 222 293/490 (60%) 13107.m05208 protein EMB1011, putative, expressed
TAIR PP10 AT1G55540.1 +3 7e-65 245 181/504 (36%) Nuclear pore complex protein | chr1:20734759-20743049 REVERSE LENGTH=1816