MLOC_6725 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5575480.9480320.8240930.763788
LEAShoots from the seedlings (10 cm shoot stage)1.608620.4650960.6592850.81662
INF1Young developing inflorescences (5mm)1.016610.9129110.8870620.73002
INF2Developing inflorescences (1-1.5 cm)3.412733.232033.44513.40689
ROORoots from the seedlings (10 cm shoot stage)0.1357620.3819960.1343290.387541
NODDeveloping tillers at six leaf stage, 3rd internode1.365111.561591.501845.42908
CAR5Developing grain, bracts removed (5 DPA)66.126168.56469.173560.9193
CAR15Developing grain, bracts removed (15 DPA)1.251931.875971.411933.0259



CDS Structure of MLOC_6725






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6725.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6725.2CUST_15084_PI427708080AvailableAvailablecontig_138011 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g33940.1 -2 7e-78 269 152/311 (49%) 13109.m03398 protein expressed protein
TAIR PP10 AT1G05950.1 -2 1e-28 122 80/271 (30%) unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:1804573-1807471 REVERSE LENGTH=627