MLOC_67239 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.9665622.113316.277912.3699
LEAShoots from the seedlings (10 cm shoot stage)29.067417.423723.50616.5119
INF1Young developing inflorescences (5mm)22.660729.547224.261915.577
INF2Developing inflorescences (1-1.5 cm)22.042821.448422.633519.0682
ROORoots from the seedlings (10 cm shoot stage)12.908914.455610.921712.7035
NODDeveloping tillers at six leaf stage, 3rd internode16.287624.524427.550570.4647
CAR5Developing grain, bracts removed (5 DPA)19.646218.512124.485415.1643
CAR15Developing grain, bracts removed (15 DPA)17.119514.967617.269127.3823



CDS Structure of MLOC_67239






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_67239.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_67239.1CUST_9045_PI427708083AvailableAvailablecontig_52772 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40780.3 +2 9e-81 269 143/202 (71%) 13110.m03781 protein CCR4-Not complex component, Not1domain containing protein, expressed
TAIR PP10 AT1G02080.2 +2 9e-37 141 82/202 (41%) transcription regulators | chr1:373694-386682 FORWARD LENGTH=2377