MLOC_67194 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains35.487833.248734.969932.5411
LEAShoots from the seedlings (10 cm shoot stage)23.528125.849725.374319.8627
INF1Young developing inflorescences (5mm)37.592644.439442.200833.7517
INF2Developing inflorescences (1-1.5 cm)40.807246.047443.956544.6606
ROORoots from the seedlings (10 cm shoot stage)47.802343.888550.084149.0654
NODDeveloping tillers at six leaf stage, 3rd internode22.900926.309125.623574.1658
CAR5Developing grain, bracts removed (5 DPA)41.693946.071935.57137.8182
CAR15Developing grain, bracts removed (15 DPA)7.812286.757368.3334816.5344



CDS Structure of MLOC_67194






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_67194.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373306NoneNoneNoneNone
MLOC_67194.1CUST_5454_PI427708080AvailableAvailablecontig_52696 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g17280.1 -1 1e-126 370 212/246 (86%) 13102.m01928 protein gamma-secretase subunit APH-1B, putative, expressed
TAIR PP10 AT2G31440.1 -1 3e-96 291 162/247 (66%) INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:13399309-13400971 REVERSE LENGTH=250