MLOC_67170 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4797720.5689121.004180.647832
LEAShoots from the seedlings (10 cm shoot stage)0.482431.053111.362240.841907
INF1Young developing inflorescences (5mm)1.597741.688781.943981.53805
INF2Developing inflorescences (1-1.5 cm)1.049171.367161.050331.38176
ROORoots from the seedlings (10 cm shoot stage)0.3258641.098171.152711.17995
NODDeveloping tillers at six leaf stage, 3rd internode0.2070720.5235612.300952.69161
CAR5Developing grain, bracts removed (5 DPA)0.7577550.8726180.7505630.82413
CAR15Developing grain, bracts removed (15 DPA)0.6256830.9602840.9549972.0344



CDS Structure of MLOC_67170






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_67170.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362134NoneNoneNoneNone
MLOC_67170.1CUST_420_PI427708083AvailableAvailablecontig_52663 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g30974.1 +1 1e-45 171 106/239 (44%) 13102.m03387 protein expressed protein
TAIR PP10 AT1G28120.1 +1 6e-14 73 62/230 (27%) CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:9813219-9815143 REVERSE LENGTH=306